PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03824.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 346aa    MW: 40261.5 Da    PI: 5.6796
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03824.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.56e-35421332102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d+ +++++sws++g+sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll++i+
    KHN03824.1  42 FLTKTFDVVDDPVTNHVVSWSRDGTSFVVWDPNTFSTSLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFIRGHRHLLRNIR 129
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    KHN03824.1 130 RRKA 133
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.35E-3538131IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.5E-6038131IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3838131IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-194265IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3142131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434081105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1993105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MNYMYQVKEE YLESSPSSSY QLGGEFPAKP IEGLHDTGPP PFLTKTFDVV DDPVTNHVVS  60
WSRDGTSFVV WDPNTFSTSL LPRYFKHNNF SSFVRQLNTY GFRKIDPDKW EFANEGFIRG  120
HRHLLRNIRR RKAPSQLTQG HHCVEVGRFD LDKEIDRLRH DKLVLLMELV NLRKQQQKAR  180
MYIQEMEQRL QGTEIKQKQM MAFLARAIKN PTFIHQLLQK EKSKELEEAF TKKRRQIEQG  240
ARGFGESSSV KVEALEFGDS EFGISELEML AREMQGFGKG GIDREVGPEA LESQERLDRV  300
LDEEFWEELL FSEKFEGRLD IPTAEDKDED VIKVLANQLD LLDSSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-244013118120Heat shock factor protein 1
5d5u_B6e-244013127129Heat shock factor protein 1
5d5v_B6e-244013127129Heat shock factor protein 1
5d5v_D6e-244013127129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963080.0JN896308.1 Glycine max heat shock transcription factor HSFA6b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276249.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-109HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A0B2P8E50.0A0A0B2P8E5_GLYSO; Heat stress transcription factor A-6b
STRINGGLYMA10G03530.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]